Variants
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rs114400765

  • Conflicting interpretations of pathogenicity

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Description

This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as likely benign is not then subjected to further curation. The score for this variant resulted in a classification of likely benign for this disease.

In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 26489029)

Reference Allele

C


Alternative Allele

G

T

Chromosome

13


Location

38880315


Variant Type

SNP

Genes

ClinVar

Name

NM_207361.6(FREM2):c.9038C>T (p.Thr3013Met)


Allele

T


Clinical Significance

Conflicting interpretations of pathogenicity

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