Variants
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rs1396328756

  • Uncertain significance

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Description

This sequence change replaces serine with alanine at codon 379 of the FGD4 protein (p.Ser379Ala). The serine residue is highly conserved and there is a moderate physicochemical difference between serine and alanine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with FGD4-related disease. Algorithms developed to predict the effect of missense changes on protein structure and function do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C65"). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site, but this prediction has not been confirmed by published transcriptional studies. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

Reference Allele

T


Alternative Allele

G

Chromosome

12


Location

32610778


Variant Type

SNP

Genes

ClinVar

Name

NM_001370298.3(FGD4):c.1546T>G (p.Ser516Ala)


Allele

G


Clinical Significance

Uncertain significance

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