Variants
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rs201898716

  • Uncertain significance

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Description

This sequence change replaces proline with leucine at codon 228 of the SAMD11 protein (p.Pro228Leu). The proline residue is weakly conserved and there is a moderate physicochemical difference between proline and leucine. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the ExAC database. This variant has not been reported in the literature in individuals affected with SAMD11-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The leucine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

Reference Allele

C


Alternative Allele

A

T

Chromosome

1


Location

939437


Variant Type

SNP

Genes

Phenotypes

ClinVar

Name

NM_001385641.1(SAMD11):c.1195+25C>T


Allele

T


Clinical Significance

Uncertain significance

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